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gtatgtgcactgttttattctgttgttgaagagcacttggtcacctcatggtgattgtgagtgcataacttttcttatcaccaatgacatggttcattctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGC
species | Oryza sativa |
transcript | LOC_Os12g41860.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACCGCTCTATGAATCTGCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58682524|gb|CK071211.1|CK071211
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58682326|gb|CK071013.1|CK071013
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58684320|gb|CK073007.1|CK073007
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58682325|gb|CK071012.1|CK071012
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58667004|gb|CK055690.1|CK055690
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCEST: gi|58675501|gb|CK064188.1|CK064188
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
EST: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCA GCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCC
genomic: GACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAgtatgtgcac ... ttctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCC
tgattgtgagtgcataacttttcttatcaccaatgacatggttcattctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGC
gcataac putative branch site (score: 10)
ttcattct putative PPT
ataacttttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcactgttttattctgttgttgaagagcacttggtcacctcatggtgattgtgagtgcataacttttcttatcaccaatgacatggttcattctgttcagGCATTGCGACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT