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...atgtgattaactatgtgacatttatatggcacttatgaatttcagtatacatttgtggatgaactagtaattcatttcttttcatccttctgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTGGAATGTCTCAATTCTTCAATAATGGATACACCAGAGTGTCAACAGCTGT
species | Oryza sativa |
transcript | LOC_Os12g40490.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAG CCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTGEST: gi|29637733|gb|CB642742.1|CB642742
genomic: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAGgtcagtgcag ... tgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTG
EST: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAG CCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTGEST: gi|38478468|gb|CF962601.1|CF962601
genomic: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAGgtcagtgcag ... tgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTG
EST: GATGGCACTCCTAGTGTGTTGCAGTTGTGAAAGAATGGAG CCGATGGACATCAAATACATCACAGTTAGATGATGGGAGGAAACTCTGCTTEST: gi|29680651|gb|CB676926.1|CB676926
genomic: GATGGCACTCCTAG-GTGTTGCAGTTGTGAAAGAATGGAGgtcagtgcag ... tgaaattcagCCGATGGACATCAAATACATCACA-TTAGATGATGGGAGGAAACTCTGCTT
EST: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAG CCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTG
genomic: CCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAGgtcagtgcag ... tgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTG
tatacatttgtggatgaactagtaattcatttcttttcatccttctgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTGGAATGTCTCAATTCTTCAATAATGGATACACCAGAGTGTCAACAGCTGT
ttcatttcttttcatc CT-rich tract
taattcatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgattaactatgtgacatttatatggcacttatgaatttcagtatacatttgtggatgaactagtaattcatttcttttcatccttctgaaattcagCCGATGGACATCAAATACATCACATTAGATGATGGGAGGAAACTCTGCTTGGAATGTCTCAATTCTTCAATAATGGATACACCAGAGTGTCAACAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
-tgtgatt
- - - - - ctatgtg
- - - - - - - - - - - - - - - -cttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatg