1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagcaactcatcagcatgtaacccttgttatttttatccaatatattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGCCTAGACGACAGGAAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
species | Oryza sativa |
transcript | LOC_Os12g38970.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGEST: gi|88905995|gb|CI089581.1|CI089581
genomic: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
EST: GTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACACTCCTCGCAAACCATCCTTTCCTGCTCGTCCGEST: gi|38478397|gb|CF962530.1|CF962530
genomic: GTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGEST: gi|89163489|gb|CI100379.1|CI100379
genomic: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
EST: ACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGEST: gi|29623852|gb|CB628863.1|CB628863
genomic: ACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGEST: gi|218497446|gb|FG952452.1|FG952452
genomic: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
genomic: AACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCG
ttttatccaatatattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGCCTAGACGACAGGAAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
cattttc CT-rich tract
tgtttatacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaactcatcagcatgtaacccttgttatttttatccaatatattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCCTTTCCTGCTCGTCCGCCTAGACGACAGGAAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG