1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtaaaaaaacattttttagactatgaaggtgttgcaccattttgtcattaacagattaacatatcaatgcatgtagatgcttaccaaacattttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATTGAGTATAAGGTCTATCAAATTGGTGTTTTGGTACCAGCACAACCCCTC
species | Oryza sativa |
transcript | LOC_Os12g37960.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|29658220|gb|CB654495.1|CB654495
genomic: ATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|29644241|gb|CB649248.1|CB649248
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|88977524|gb|CI025260.1|CI025260
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|22307835|gb|BQ909057.1|BQ909057
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|88443871|gb|CI552416.1|CI552416
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATEST: gi|29684087|gb|CB680362.1|CB680362
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
EST: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAG GTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
genomic: ACATGACTGGTCCTGCAGAGGCTGTCTTCTATGGATCTGCTGTTCACTAGgtcagcttgt ... ttttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGAT
cattaacagattaacatatcaatgcatgtagatgcttaccaaacattttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATTGAGTATAAGGTCTATCAAATTGGTGTTTTGGTACCAGCACAACCCCTC
tgcttac putative branch site (score: 34)
catttttttt putative PPT
aaacatttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaacattttttagactatgaaggtgttgcaccattttgtcattaacagattaacatatcaatgcatgtagatgcttaccaaacattttttttagGTACCAGGGACCAAGCTGGAAAAGTTTACCGCAACTGGGAGCCTGAGAGATTGAGTATAAGGTCTATCAAATTGGTGTTTTGGTACCAGCACAACCCCTC
- aaaaaaa
- - - - - - - - - - - - - - gtgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac