1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtataatcttggtcacaataagttttctgctcggttagcacatttttagtataactgacataaacactgacaccatttctttcttgtgtcaaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAAATAGGGTTTGAAAAACAAGCATTATCAATGGGATATCAAGCTTGTGGT
species | Oryza sativa |
transcript | LOC_Os12g26290.6 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGA CATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAEST: gi|29665953|gb|CB662228.1|CB662228
genomic: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGAgtgagtaaac ... caaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAA
EST: GGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGA CATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAEST: gi|25800115|gb|CA756076.1|CA756076
genomic: GGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGAgtgagtaaac ... caaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAA
EST: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGA CATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAEST: gi|33675490|gb|CF303729.1|CF303729
genomic: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGAgtgagtaaac ... caaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAA
EST: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGA CATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAEST: gi|29625831|gb|CB630842.1|CB630842
genomic: GATCCGACAGGGCAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGAgtgagtaaac ... caaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAA
EST: CAACCCGATGCAAATAATTCCCCACCATACCTGGAAGA CATCGATATTGGAGAGATGACTGGTCTCAAGGGGGAAGAACAGCTATCAAA
genomic: CAACCCGATGCAAATAATTCCCCACCATGCCTGGAAGAgtgagtaaac ... caaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAA
tttagtataactgacataaacactgacaccatttctttcttgtgtcaaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAAATAGGGTTTGAAAAACAAGCATTATCAATGGGATATCAAGCTTGTGGT
cactgac putative branch site (score: 2)
tttctttcttgtgtc putative PPT
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtataatcttggtcacaataagttttctgctcggttagcacatttttagtataactgacataaacactgacaccatttctttcttgtgtcaaaatgtagCATCGATATTGGAGAGATGATTGGTCTCAAGGGGGAAGAACAGCTATCAAAAATAGGGTTTGAAAAACAAGCATTATCAATGGGATATCAAGCTTGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT