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gtaagcaacaatttacaagaaaggttgaaaagaatggtagatcatgaactaaattctggtttttaaacatctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTCATGCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAA
species | Oryza sativa |
transcript | LOC_Os12g23170.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCGTAACGGTGTGCCAATTGGGGAAACAG GCGTACTCGAACTGEST: gi|66916200|gb|CX103048.1|CX103048
genomic: ATGAGCGTAACGGTGTGCCAATTGGG-AAACAGgtaagcaaca ... atctatgcagGCGTACTCGAACTG
EST: ATGAGCGTAACGGTGTGCCAATTGGGAAACAG GCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTCEST: gi|86504427|gb|CI147060.1|CI147060
genomic: ATGAGCGTAACGGTGTGCCAATTGGGAAACAGgtaagcaaca ... atctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTC
EST: AAATTTCATATGAGCGTAACGGTGTGCCAATTGGGAAACAG GCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTCEST: gi|87007240|gb|CI277315.1|CI277315
genomic: AAATTTCATATGAGCGTAACGGTGTGCCAATTGGGAAACAGgtaagcaaca ... atctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTC
EST: ATGAGCGTAACGGTGTGCCCATTGGGAAACAG GCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTC
genomic: ATGAGCGTAACGGTGTGCCAATTGGGAAACAGgtaagcaaca ... atctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTC
gttgaaaagaatggtagatcatgaactaaattctggtttttaaacatctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTCATGCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAA
aactaaa putative branch site (score: 32)
tttttaaacatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaacaatttacaagaaaggttgaaaagaatggtagatcatgaactaaattctggtttttaaacatctatgcagGCGTACTCGAACTGGCTTTATGTTGTTCCTTGGGGGATCTACAAAGCTGTCATGCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA