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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagtagttcgattcaatgaccatacttttacatttggaatgcagttgcttatttgttgattgctgtcatgattctcattttgttcaatgaccatactagGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTGAACAGGCATCACTCAGACAACAATACCAATCAAAG

Basic information

species Oryza sativa
transcript LOC_Os12g13590.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29669745|gb|CB666020.1|CB666020
EST:     TCTATCAGTTGTGGGGATTTGGACATTGAAG                         GTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTG
genomic: TCTATCAGTTGTGGGGATTTGGACATTGAAGgtatcttgta ... accatactagGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTG
EST: gi|58677785|gb|CK066472.1|CK066472
EST:     GCTAAAGAG-TGCAATCTATCAGTTGTGGGGATTTGGACATTGAAG                         GTCTCACTGAGTCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTG
genomic: GCTAAAGAGTTGCAATCTATCAGTTGTGGGGATTTGGACATTGAAGgtatcttgta ... accatactagGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttatttgttgattgctgtcatgattctcattttgttcaatgaccatactagGTCTCACTGAATCCATATTTGTTTCCCACAAAGATGAGTACACAGAATTTGAACAGGCATCACTCAGACAACAATACCAATCAAAG
         tgttgat  putative branch site (score: 4)
     tatttgtt  TA-rich tract