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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcctaccatattatttgaattaatatattgtgaccaaacaatattattttgcttgaccacaagtctctaccttacagttttgtatattactattgcagGCTTCTCTACTAGAAGAGACCGTAAAGCCTAGGGCAAATCTCCCACCACTCCTTGTCCATCTTCGCGAACGTCGTCCTGAAAAGCTCCATTATCTTGGTG

Basic information

species Oryza sativa
transcript LOC_Os12g07300.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687463|gb|CK076150.1|CK076150
EST:     AGGAGGAAAATGAAGAGCCTGAAGTCAGGATCACTGAGGCTGCAGAGAAG                         GCTTCTCTACTAGAAGAGACCGTAAAGCCTAGGGCAAATCTCCCACCACTC
genomic: AGGAGGAAAATGAAGAGCCTGAAGTCAGGATCACTGAGGCTGCAGAGAAGgttcatttga ... actattgcagGCTTCTCTACTAGAAGAGACCGTAAAGCCTAGGGCAAATCTCCCACCACTC
EST: gi|58608339|gb|CK036372.1|CK036372
EST:     AGGAGGAAAATGAAGAGCCTGAAGTCAGGATCACTGAGGCTGCAGAGAAG                         GCTTCTCTACTAGAAGAGACCGTAAAGCCGAGGGCAAATCTCCCACCACTC
genomic: AGGAGGAAAATGAAGAGCCTGAAGTCAGGATCACTGAGGCTGCAGAGAAGgttcatttga ... actattgcagGCTTCTCTACTAGAAGAGACCGTAAAGCCTAGGGCAAATCTCCCACCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttgcttgaccacaagtctctaccttacagttttgtatattactattgcagGCTTCTCTACTAGAAGAGACCGTAAAGCCTAGGGCAAATCTCCCACCACTCCTTGTCCATCTTCGCGAACGTCGTCCTGAAAAGCTCCATTATCTTGGTG
                         accttac  putative branch site (score: 3)
 ttttgtatattactat  TA-rich tract