1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagcaatagtcatgttctgttcagactagtagttgttagcccttcttaactgattggaccatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCATGCTGATCCTTTCCACAGTTACTGTGTTGCACTTGTGGTAGCTGCACACA
species | Oryza sativa |
transcript | LOC_Os12g07110.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGATATTGTGAAGCTTCAACATGGTGAATATGTGTCTCTCGGGAAG GTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCATEST: gi|29622299|gb|CB627310.1|CB627310
genomic: AAAAGGATATTGTGAAGCTTCAACATGGTGAATATGTGTCTCTCGGGAAGgtcagcaata ... accatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCAT
EST: AAAAGGATATTGTGAAGCTTCAACATGGTGAATATGTGTCTCTCGGGAAG GTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCATEST: gi|86436734|gb|CI118456.1|CI118456
genomic: AAAAGGATATTGTGAAGCTTCAACATGGTGAATATGTGTCTCTCGGGAAGgtcagcaata ... accatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCAT
EST: TGTGTCTCTCGGGAAG GTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCAT
genomic: TGTGTCTCTCGGGAAGgtcagcaata ... accatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCAT
tgttctgttcagactagtagttgttagcccttcttaactgattggaccatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCATGCTGATCCTTTCCACAGTTACTGTGTTGCACTTGTGGTAGCTGCACACA
ttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcaatagtcatgttctgttcagactagtagttgttagcccttcttaactgattggaccatcacagGTGGAGGCTGCTCTGATTGTGAGCCCATATGTGGAGAACATCATGATCCATGCTGATCCTTTCCACAGTTACTGTGTTGCACTTGTGGTAGCTGCACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC