1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatccatgtgcctggtctaccaaccctttttaccttgcacattactttatctctgttatcattttttatgactgcatatttctttggtcaactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAAGCTTCTACTACTCAAGAAAGTGCAGAATCACATCAGAAAAGCTTATTCA
species | Oryza sativa |
transcript | LOC_Os12g03860.5 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCG GAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAAEST: gi|33796112|gb|CF323922.1|CF323922
genomic: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCGgtatgtatta ... aactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAA
EST: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCG GAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGGAGTGGAGACAGCTGAEST: gi|33797355|gb|CF324540.1|CF324540
genomic: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCGgtatgtatta ... aactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGG-AGTGGAGACAGCTGA
EST: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCG GAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAA
genomic: GTATATCACTTTTTGCTCTCTTGGTCCTCCTAAGCTGTATATGGCTACCGgtatgtatta ... aactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAA
ctttatctctgttatcattttttatgactgcatatttctttggtcaactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAAGCTTCTACTACTCAAGAAAGTGCAGAATCACATCAGAAAAGCTTATTCA
tgttatcattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatccatgtgcctggtctaccaaccctttttaccttgcacattactttatctctgttatcattttttatgactgcatatttctttggtcaactaaacagGAGACCCTACATAAGCATAAAGGCCTTGAAGTGGGAGTGGAGACAGCTGAAGCTTCTACTACTCAAGAAAGTGCAGAATCACATCAGAAAAGCTTATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tgatcca
- - - - gtgcctg
- - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgca