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gtaataattgccatattttttatatctttatcgccacagctgacctccttaattgctactaaactcttttatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAAAA
species | Oryza sativa |
transcript | LOC_Os12g03470.5 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTGAGGACCTGGGCGCTGCCCCAATCTGGGTGTTTAACAATG GAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAAEST: gi|55410431|gb|CV722807.1|CV722807
genomic: CTTTCTGAGGACCTGGGCGCTGCCCCAATCTGGGTGTTTAACAATGgtaataattg ... tatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAA
EST: CTTTCTGAGGACCTGGGCGCTGCCCCAATCTGGGTGTTTAACAATG GAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGEST: gi|29630007|gb|CB635016.1|CB635016
genomic: CTTTCTGAGGACCTGGGCGCTGCCCCAATCTGGGTGTTTAACAATGgtaataattg ... tatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTG
EST: CTTTCTGAGGACCTGGGCGCTGCCCCAATTTGGGTGTTTAACAATG GAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAA
genomic: CTTTCTGAGGACCTGGGCGCTGCCCCAATCTGGGTGTTTAACAATGgtaataattg ... tatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAA
tctttatcgccacagctgacctccttaattgctactaaactcttttatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAAAA
tactaaa putative branch site (score: 1)
ctcttttat CT-rich tract
taaactcttttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataattgccatattttttatatctttatcgccacagctgacctccttaattgctactaaactcttttatatatcagGAATCAGCCATAATGATGAAGTTGATACTGCTGCAATTGCTCCTTTTGTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC