1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtttgcattcaaatggatgaacttttggctatttgtgcttaacatatttctagacatcttaccatcctgtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGAATAACAGAGTTGCTGATTCTGCTTTTGGAGCAGCTATGAAG
species | Oryza sativa |
transcript | LOC_Os11g29200.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAG TGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGEST: gi|29634970|gb|CB639979.1|CB639979
genomic: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAGgtttgcattc ... gtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAG
EST: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAG TGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGEST: gi|29679562|gb|CB675837.1|CB675837
genomic: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAGgtttgcattc ... gtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAG
EST: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAG TGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGEST: gi|58671732|gb|CK060418.1|CK060418
genomic: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAGgtttgcattc ... gtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAG
EST: AAGATGTATATACACCTCTACAAAAGGATCTGATTCTTCCAGTTTCTGAG TGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCT
genomic: AAGATGTATATACACCTCTACAAAAGGATTTGATTCTTCCAGTTTCTGAGgtttgcattc ... gtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCT
tttggctatttgtgcttaacatatttctagacatcttaccatcctgtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGAATAACAGAGTTGCTGATTCTGCTTTTGGAGCAGCTATGAAG
atcttac putative branch site (score: 34)
ttaacatatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcattcaaatggatgaacttttggctatttgtgcttaacatatttctagacatcttaccatcctgtggtttcagTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGAATAACAGAGTTGCTGATTCTGCTTTTGGAGCAGCTATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT