1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttatgatcaatcactgtttcccaccactcttgactaccatgatattaaataatatttgcgttggcattggtgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACT
species | Oryza sativa |
transcript | LOC_Os11g17610.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|88271211|gb|CI387264.1|CI387264
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGACACGTCACTTTCTCCTGACTAATGAGTACCCTACAGAAAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86427132|gb|CI072229.1|CI072229
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86485836|gb|CI128469.1|CI128469
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|88506305|gb|CI433811.1|CI433811
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|88485472|gb|CI422743.1|CI422743
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|88901816|gb|CI374424.1|CI374424
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86598669|gb|CI355286.1|CI355286
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATTATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86490045|gb|CI132678.1|CI132678
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTTTACTACTTAGGAAEST: gi|88540023|gb|CI470031.1|CI470031
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86883137|gb|CI314316.1|CI314316
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTTACGAATGAGTACCCTACACAGAAGAG CGTTAATCCGATGATGCTTGGGTGCATTGCTGGCTCTGTACTACTTAGGAAEST: gi|88488080|gb|CI425351.1|CI425351
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAEST: gi|86887072|gb|CI325887.1|CI325887
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTTTACTACTTAGGAAEST: gi|218499213|gb|FG962191.1|FG962191
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
EST: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAG CGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
genomic: TCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGgttatgatca ... tgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAA
actcttgactaccatgatattaaataatatttgcgttggcattggtgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACT
tcttgac putative branch site (score: 5)
taccatgatattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgatcaatcactgtttcccaccactcttgactaccatgatattaaataatatttgcgttggcattggtgcggtacagCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA