1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttttcatttttgtggaattgcattgaattgccccgaatctctgaacactatgataattttcatgcgcttacaaataaagttgttcttgctctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGAGCAACAACAGCAGGTGATTC
species | Oryza sativa |
transcript | LOC_Os11g07490.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATAATTCTGCTGCTGTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAG CTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACAEST: gi|29665928|gb|CB662203.1|CB662203
genomic: ATAATTCTGCTGCTGTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAGgtactcccta ... tctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACA
EST: ATAATTCTGCTGCTGTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAG CTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACAEST: gi|88831192|gb|CI082002.1|CI082002
genomic: ATAATTCTGCTGCTGTTAGCTTCCAGCAGCCAGAGAACGAAGTGCCTCAGgtactcccta ... tctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACA
EST: GAGAACGAAGTGCCTCAG CTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACA
genomic: GAGAACGAAGTGCCTCAGgtactcccta ... tctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACA
acactatgataattttcatgcgcttacaaataaagttgttcttgctctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGAGCAACAACAGCAGGTGATTC
cgcttac putative branch site (score: 5)
ttcttgctctgttcc putative PPT
atgataattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcatttttgtggaattgcattgaattgccccgaatctctgaacactatgataattttcatgcgcttacaaataaagttgttcttgctctgttccagCTCACACCCGATGTTGAGTCGGCTCTTCTGCAGCAAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGAGCAACAACAGCAGGTGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- tttcatt
- - - - - - - - - -tgcattg
- - - - - - - - - - - - - - -tgccccg
- - - - - - - - - - - - - - - - - - - - -ctgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttaca