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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagcacttcaactgcacaaagttatatgctaaaatgtatgctaggtaatttagtttatttgcacatttgaagatactaatatttcgtaatgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG

Basic information

species Oryza sativa
transcript LOC_Os11g04030.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86431076|gb|CI083499.1|CI083499
EST:     GCAATGATCAAAAGTGTTCATGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|88841567|gb|CI080823.1|CI080823
EST:     GTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|29678071|gb|CB674346.1|CB674346
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTTTTTTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|86260630|gb|CI066503.1|CI066503
EST:     ATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: ATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|86494925|gb|CI137558.1|CI137558
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|29680055|gb|CB676330.1|CB676330
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|87006928|gb|CI275236.1|CI275236
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|29644402|gb|CB649409.1|CB649409
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|87025643|gb|CI250137.1|CI250137
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|29679866|gb|CB676141.1|CB676141
EST:     GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTTTACAAAACAAAGCAGTG
genomic: GACTTGGTGTGGCCCTCTATAGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|88841121|gb|CI080575.1|CI080575
EST:     AGTGCAGCAATGATCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCCCTTCTACAAAACAAAGCAGTG
genomic: AGTGCAGCAATGATCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
EST: gi|89193059|gb|CI050357.1|CI050357
EST:     TCAAAAGTGTTCTTGCT                         ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
genomic: TCAAAAGTGTTCTTGCTgtaagtactt ... tgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttagtttatttgcacatttgaagatactaatatttcgtaatgttgatcagATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG
                             tactaat  putative branch site (score: 1)
                         aagatactaatattt  TA-rich tract