1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaatacattattcttatttatatttttcttgttttaccatatgttttcttatcgctagcatgcccattaactgcttacagtttttatcttgaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAAG
species | Oryza sativa |
transcript | LOC_Os11g03780.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGGTTG GGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTEST: gi|33796277|gb|CF324005.1|CF324005
genomic: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATG-TTGgtaatacatt ... tgaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTT
EST: CTTTCTGAAGACCTGGGTGCTGCCC-TATTTTGGGGTGTTCAATGGCTG GGATCAGCCACCATGNATGAAGTCGATACCACCATAATTGAACCTTTTGTEST: gi|27548162|gb|CA766165.2|CA766165
genomic: CTTTCTGAAGACCTGGGTGCTGCCCCTATTT-GGG-TGTTCAATGT-TGgtaatacatt ... tgaaatttagGGATCAGCCACCATG-ATGAAGTCGATACCACCATAATTGAACCTTTTGT
EST: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGTTG GGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAEST: gi|88722894|gb|CI746404.1|CI746404
genomic: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGTTGgtaatacatt ... tgaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTA
EST: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGTTG GGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACC
genomic: CTTTCTGAAGACCTGGGTGCTGCCCCTATTTGGGTGTTCAATGTTGgtaatacatt ... tgaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACC
tttcttatcgctagcatgcccattaactgcttacagtttttatcttgaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAAG
tgcttac putative branch site (score: 30)
tttttatctt putative PPT
tttttatcttgaaatt TA-rich tract