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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcattaccactagctatttgtaaattgtgagaattcagaatccacagtttgtgtagagttgtggattctgaattctcacaattcacaaaatccatcctgaccatttatgatataatcttctcgatccctttgtttctgattcacagTGATCCGCACCCCTGAGGCAAGAACAAATATGATGAAGCTGTCGCAGCGGATGATCACCACTTTCTGTGCTAACATCAGTGCTTCTGGAACCCAATCTTG

Basic information

species Oryza sativa
transcript LOC_Os10g42490.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42490.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G123140_T02 (Zea mays), 3'ss of exon 7
gtgcgcattaccactagctatttgtaaattgtgagaattcagaatccacagtttgtgtagagttgtggattctgaattctcacaattcacaaaatccatcctgaccatttatgatataatcttctcgatccctttgtttctgattcacagTGATCCGCACCCCTGAGGCAAGAACAAATATGATGAAGCTGTCGCAGCGGATGATCACCACTTTCTGTGCTAACATCAGTGCTTCTGGAACCCAATCTTG
                                               | |  |  |  |    |     || |   ||||||  ||   ||  |||       |   |       ||  |||| |  | |  ||| ||| | | |  ||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| | ||||| ||| ||||||||||||||||| | |||||||||
----------------------------------------------gataactacttca----ttcactttttattttctcatcatcaccagcatcttcaaaaagtctaaccatcatgttctttttcacctttttctttgtaactaccagTGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGATGATCACTAGTTTCTCTGCCAACATCAGTGCTTCTGGGAGCCAATCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatcctgaccatttatgatataatcttctcgatccctttgtttctgattcacagTGATCCGCACCCCTGAGGCAAGAACAAATATGATGAAGCTGTCGCAGCGGATGATCACCACTTTCTGTGCTAACATCAGTGCTTCTGGAACCCAATCTTG
                        tcttctcgatcccttt  CT-rich tract
           atttatgatataatct  TA-rich tract