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gtaagccataaactggtctgcttgctcttacctgcaaaatatcaattactacttccatgtcttgatgtataatattgctcacttggctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG
species | Oryza sativa |
transcript | LOC_Os10g40550.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAGGATGCATTCAAG GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCEST: gi|86846139|gb|CI339762.1|CI339762
genomic: TGAGGATGCATTCAAGgtaagccata ... gctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCC
EST: CAAGACTGATGAGGATGCATTC-AG GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCEST: gi|87032029|gb|CI362109.1|CI362109
genomic: CAAGACTGATGAGGATGCATTCAAGgtaagccata ... gctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCC
EST: TTGGAGATGACAAGACTGATGAGGATGCATTCAAG GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCEST: gi|33822165|gb|CF336898.1|CF336898
genomic: TTGGAGATGACAAGACTGATGAGGATGCATTCAAGgtaagccata ... gctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCC
EST: TTCTTCCTATCTATGTTGGAGATGACAAGGCTGATGAGGATGCATTCAAG GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCEST: gi|88254453|gb|CI353277.1|CI353277
genomic: TTCTTCCTATCTATGTTGGAGATGACAAGACTGATGAGGATGCATTCAAGgtaagccata ... gctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCC
EST: ATGACAAGACTGATGAGGATGCATTCAAG GTTCTGAAGGCAAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCC
genomic: ATGACAAGACTGATGAGGATGCATTCAAGgtaagccata ... gctcaaatagGTTCTGAAGGC-AAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCC
atcaattactacttccatgtcttgatgtataatattgctcacttggctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG
tgctcac putative branch site (score: 2)
ttgatgtataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccataaactggtctgcttgctcttacctgcaaaatatcaattactacttccatgtcttgatgtataatattgctcacttggctcaaatagGTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA