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gttactagatctactttcctcaaataaatattccactggaagctatcttaccttatcgatttagatctgctatctataatcttctctttttcaagatgtgactatgcttctagatattgtatttatataagttcctcttttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGCTCCAAAAAATGATAGNTGTCCGTTCTGCAAAGATTGACACAAG GTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAAGGAGTTTNACCCTEST: gi|33796295|gb|CF324015.1|CF324015
genomic: AAGTGGCTCCAAAAAATGATAG-TGTCCGTTCTGCAAAGATTGACACAAGgttactagat ... ttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAA-GGAGTTT-ACCCT
EST: AAGTGGCTCCAAAAAATGAATAGTGTCCGTTCTGCAAAGATTGACACAAG GTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAANGGAGTTNTACCCEST: gi|3768110|gb|AU032137.1|AU032137
genomic: AAGTGGCTCCAAAAAATGA-TAGTGTCCGTTCTGCAAAGATTGACACAAGgttactagat ... ttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAA--GGAGTT-TACCC
EST: CAAGTGGCCCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACCAG GTCCCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGAEST: gi|33801565|gb|CF326654.1|CF326654
genomic: CAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAGgttactagat ... ttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGA
EST: CAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG GTACCATTTGGACTTGTGCAGAAATGTTTTTGGTTTAGGAGTTTACCCTGAEST: gi|163918133|gb|EG713999.1|EG713999
genomic: CAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAGgttactagat ... ttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGA
EST: CAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG GTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGA
genomic: CAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAGgttactagat ... ttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGA
gatgtgactatgcttctagatattgtatttatataagttcctcttttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG
ttcctcttttctttct CT-rich tract
ttctagatattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactagatctactttcctcaaataaatattccactggaagctatcttaccttatcgatttagatctgctatctataatcttctctttttcaagatgtgactatgcttctagatattgtatttatataagttcctcttttctttctagGTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG