1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatcattgtgagtgtggtaatgctgggagtacaaattttgtgccatgcaacatatacaacagttcttatagtgtaccttattttcaatttacgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTGCAGAGATACATGGGGTGACTATGAATGTACTTGCAGTGGGGACCTACT
species | Oryza sativa |
transcript | LOC_Os10g20630.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGCCAGTGTCCAGCTGGTTTCCGGGGGGATGGCGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAAEST: gi|33692858|gb|CF321097.1|CF321097
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAA
EST: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTEST: gi|33796525|gb|CF324129.1|CF324129
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
EST: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTEST: gi|218487201|gb|FG969113.1|FG969113
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
EST: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCGAGAATGCAGTTEST: gi|29674931|gb|CB671206.1|CB671206
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
EST: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTEST: gi|33692859|gb|CF321098.1|CF321098
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
EST: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAG ACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
genomic: ATGCCAGTGTCCAGCTGGTTTCCGAGGGGATGGTGTTAAAAAATGTGAAGgtattttacg ... acgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTT
tgcaacatatacaacagttcttatagtgtaccttattttcaatttacgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTGCAGAGATACATGGGGTGACTATGAATGTACTTGCAGTGGGGACCTACT
ttattttcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcattgtgagtgtggtaatgctgggagtacaaattttgtgccatgcaacatatacaacagttcttatagtgtaccttattttcaatttacgtttgcagACATCAATGAGTGCAAAGAGAAAAAAGCTTGTCAATGTCCAGAATGCAGTTGCAGAGATACATGGGGTGACTATGAATGTACTTGCAGTGGGGACCTACT
- - - - - - - - - aatgctg
- - - - - - - - - - - - - - gtacaaa
- - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacaaca