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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttagaaccagactatttatactgcaaaagccatcccactatatggtgaattcatgttcctgacttgtcacgttgttatgaaaatgcctagGCCAACTTTCCTTCACTAGAGAGCTTGATAGAGAGGATTCACGAGGATGCAAGGATAGCAGAGAAGGCCCTGAATTTACCATTATACGCCAAGTATACAG

Basic information

species Oryza sativa
transcript LOC_Os10g14814.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g14814.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G027115_T02 (Zea mays), 3'ss of exon 10
gtaatttagaaccagactatttata-ctgcaaaagccatcccactatatggtgaattcatgttcctgacttgtcacgttgt--tatgaaaatgcctagGCCAACTTTCCTTCACTAGAGAGCTTGATAGAGAGGATTCACGAGGATGCAAGGATAGCAGAGAAGGCCCTGAATTTACCATTATACGCCAAGTATACAG
|||||| ||  | |    ||||| | | || | | |  || || |     | |||| ||||| |||||||||   ||   |  | |  |||| |  |||||||||||||||| || ||||||||||||||||| ||||||||||||| |||  ||||||||||||| ||  |  | ||| | || |||||||| | ||
gtaattgagtgctaa---atttacagcagctacaactgtctcagtgagctg-gaatgcatgtgcctgacttgcggcggcatggttttgaaattctcagGCCAACTTTCCTTCGCTCGAGAGCTTGATAGAGAGAATTCACGAGGATGGAAGAGTAGCAGAGAAGGCACTAGACCTGCCAATGTATGCCAAGTACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactatatggtgaattcatgttcctgacttgtcacgttgttatgaaaatgcctagGCCAACTTTCCTTCACTAGAGAGCTTGATAGAGAGGATTCACGAGGATGCAAGGATAGCAGAGAAGGCCCTGAATTTACCATTATACGCCAAGTATACAG
                     tcctgac  putative branch site (score: 2)
                                       ttatgaaaat  TA-rich tract