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gtaagtatctgaatttgttactttccaaatttagtagttggttgacaaaattgcaggcacggttttcttactggtgtttagactgctgatgacccccattttcttaacagATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGACTGTAGAGGAGGTAGAAAATCTGTTAGGTTATTCACCAGATACCTTATTC
species | Oryza sativa |
transcript | LOC_Os09g38620.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACCGGTCCTGCATTCATTTAGAGTTTGATATTTCAGGGACTGGTCTTAC ATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGACEST: gi|58598850|gb|CK009378.1|CK009378
genomic: TACCGGTCCTGCATTCATTTAGAGTTTGATATTTCAGGGACTGGTCTTACgtaagtatct ... ttcttaacagATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGAC
EST: GACCGGTCCTGCATTCATTTAGAGTTTGATATTTCAGGGACTGGTCTTAC ATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGAC
genomic: TACCGGTCCTGCATTCATTTAGAGTTTGATATTTCAGGGACTGGTCTTACgtaagtatct ... ttcttaacagATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGAC
ggcacggttttcttactggtgtttagactgctgatgacccccattttcttaacagATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGACTGTAGAGGAGGTAGAAAATCTGTTAGGTTATTCACCAGATACCTTATTC
cccccattttctt CT-rich tract
attttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatctgaatttgttactttccaaatttagtagttggttgacaaaattgcaggcacggttttcttactggtgtttagactgctgatgacccccattttcttaacagATATGAGACTGGAGATCATGTTGGTGTATATGCAGAAAACTGCACAGAGACTGTAGAGGAGGTAGAAAATCTGTTAGGTTATTCACCAGATACCTTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG