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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC

Basic information

species Oryza sativa
transcript LOC_Os09g34040.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G142806_T01 (Zea mays), 3'ss of exon 10
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
|||||| |      ||  ||| || |  ||||  |  ||||    | | || | |     | || ||          |      |||  |  |  |||  || || ||    ||  || | | |||  || ||           |||||      |||     ||||||| ||||||||| |||| || ||||||||||||||||| |||||||| |||||||| || ||||||| |||||| ||||| ||||| |||||||| |
gtaagtcg----ctcctgtgaatgatgctaatgttaattttt--ttcccgtttgt-----tattacaccaacaaca-atctgtctgccatgcttgcaac-ttgcttgtaccgatgatagt-ttcaaacccttt----------cctctcccctcctctcatgtagTGGTCGGACAAGCTGCAGAAGCTGGATTTTCAAGAGATGGTGATGTTCCTGCAGCACCTCCCCACGAGGACCTGGGCGCACCACGAGCTGGAGATGGTCC

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA11G13330.1 (Glycine max), 3'ss of exon 9
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacc--tcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                               |  |||  | ||    ||  | |   ||| |||  | ||  || | |   |   ||||   || |   | | || | | || ||| |||| || | ||  | ||||||||||||||||  |||||||| |||| |||||  |||| ||||||||||| |||||||| ||   ||||||| ||||||  ||||||||||||||||
-------------------------------------------------------------aatttatgtatagt---tgcttaggttatttacacggtcttgttgcttt---tggcaatgcttaatttagtaggaactgaattttctttttactttttccctttagTGGTCAGACAAGCTCCAGAAACTTCATTTCCAAGAATTGGTAATGTTCCTTCAACACCTTCCAACAGAGAACTGGACTCACCGGGAGCTTGAGATGGTGC

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA15G03200.1 (Glycine max), 3'ss of exon 9
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctct-ttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                               ||||    |  |||  | | |  |  | | ||| |  ||     ||    || |     | | |   | | |  |  | |  |  |  || ||| ||  ||||||||| ||||||||  |||| |||||||| ||||||||||| |||||||||||||||||||| || | ||||||| |||| || ||||| |||||||| |
---------------------------------------------------------------tgcaacttttttgccagtacacact-tctgcaccactttgtcaatgcttctatttccccctaggatgaatattctctaatctttacaattgttttta--tcagTGGTCTGACAAGCTCCAGAAGCTTGATTTCCAAGAGATGGTAATGTTCCTTCAGCACCTTCCAACTAAGAACTGGACTCAACAGGAGCTCGAGATGGTAC

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA13G42180.1 (Glycine max), 3'ss of exon 9
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaat-taagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                               ||||    |  |||  | |||  |  | | ||| |  ||     ||    || |     | | |   | | |  | |||  | | |  || ||| ||  ||||||||| ||||| ||  |||| |||||||| |||||| |||| ||||||||||| |||||||| || | ||||||| || |||| ||||| |||||||| |
---------------------------------------------------------------tgcaatttttttgccagtaaacact-tctgcaccactttgtgaatgcttctatttccacctaggatgaatattctctaatctttataattgttttta--tcagTGGTCTGACAATCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTGACCAGGAGCTCGAGATGGTAC

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA12G05350.1 (Glycine max), 3'ss of exon 10
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacc--tcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                               || ||   || |  ||     | || | || |  |  ||  || | |   |   ||||   || |   | | || | | || ||| |||| || | ||  | ||||||||||||| ||  ||||||||||||| |||||  |||| ||||| ||||| |||||||| ||   ||||||| ||||||| ||||||||||||||||
--------------------------------------------------------------ctgaatttatg-tatagttgcttacattattta-gacattcttgcttt---tggcaatgattaatttagtagaaactgaattttctttttacttgttccctttagTGGTCAGACAAACTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTTCTTCAACACCTTCCAACAGAGAACTGGACTCACCAGGAGCTTGAGATGGTGC

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgttt-ctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                   ||| ||||    || ||  |   |  |          || || | ||||||| ||  | ||||     |    ||| | ||         |||| | ||| ||     |   |||||||| ||  |||||||||| || ||||||||||| ||||| |||||||| || |||||||||||    |||||| |  |||| ||||| || |||||  
---------------------------------------------------gtaagcaaacactgaat--cgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaataca---------agttgtttctgtaaa--caatgcagTGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTCAGACCAAGAGCTCGAAATGGTTT

upper sequence: LOC_Os09g34040.1 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 9
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaat--gtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
                                                            ||||   ||  |  |       |      ||| ||||||  |   || |  |||  |  ||   |  |  |   ||||     ||| | | ||| |||     ||||||||| || | |||  |||| |||||||| |||||| |||| ||||||||||| |||||||| ||    |||||| ||||||| ||||| ||||||||||
------------------------------------------------------------tgtt-tgtgttttttttccttgagatttctttgcacaattagaagctagattaagcatgaaacacttaaccatgtgtacact-gttttttgtttgttt-----tcagTGGTCGGATACGCTTCAGAAGCTTGATTTCCAAGAGCTGGTAATGTTCCTTCAACACCTTCCAACTCATAACTGGACTCACCAAGAGCTCGAGATGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16753794|gb|BM038173.1|BM038173
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88961123|gb|CI096526.1|CI096526
EST:     ATNATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88965042|gb|CI097910.1|CI097910
EST:     ATGATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88957061|gb|CI095105.1|CI095105
EST:     ATTATCTACCGGATTTTCTGGTAGATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88978687|gb|CI385028.1|CI385028
EST:     ATTATCTACCCGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTT-ATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|89164629|gb|CI101717.1|CI101717
EST:     ATTATCTACCGGATTTTCTGGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88546515|gb|CI476159.1|CI476159
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|58662175|gb|CK050855.1|CK050855
EST:     TTATCTACCGGATTTTCTTGTATATATATCAGCTGAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGGTGTCC
genomic: TTATCTACCGGATTTTCTTGTATATATATCAGCT-AGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCAT-GT-TCC
EST: gi|86501940|gb|CI144573.1|CI144573
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88849204|gb|CI087726.1|CI087726
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88831816|gb|CI369498.1|CI369498
EST:     ATTATTTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAACGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAA-GCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCT
EST: gi|86493863|gb|CI136496.1|CI136496
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|7332463|gb|AU085809.1|AU085809
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGNTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88223252|gb|CI223101.1|CI223101
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88833583|gb|CI077064.1|CI077064
EST:     ATCATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88471886|gb|CI409157.1|CI409157
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAANCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88224054|gb|CI223903.1|CI223903
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|86494239|gb|CI136872.1|CI136872
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88956561|gb|CI092786.1|CI092786
EST:     ATGATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATCTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|88277394|gb|CI398196.1|CI398196
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|27547564|gb|CA767379.2|CA767379
EST:     TTATCTACCCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGGTCATGTTCCT
genomic: TTATCTACC-GGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGG-TCATGTTCCT
EST: gi|88848200|gb|CI086722.1|CI086722
EST:     ATNATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
EST: gi|89165919|gb|CI103009.1|CI103009
EST:     ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACG                         TGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT
genomic: ATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 67 (downstream exon)
Score: 13

TCCTTTTCATCTTGTAACACGCTTGTGGGATACCTACCTTGCTGAAGGCGATTATCTACCGGATTTTCTTGTATATATATCAGCTAGCTTTTTGTTAACGgtaagttgaa ... tctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC
   tactaat  putative branch site (score: 13)
                                ttctctctttatttct  putative PPT
                    attgtaattaagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagTGGTCAGACAAGCTGAAGAAACTTGATTTTCAAGAGATGGTCATGTTCCTTCAGCACCTTCCGACGAGGAACTGGGCTCACCATGAGCTTGAGATGGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG