1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacgaaccacccatatgtgcaaatgatcatgtgtcatgtcagctcaaatatgtatgaagtagtaccatagcatttacttcaatattgcccttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAATAGACGGGCAAAGCGTTGGTGCCTGGATCAACCTCGTAAAGCAACTCC
species | Oryza sativa |
transcript | LOC_Os09g21780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACAACCAGCAGCAACAGTEST: gi|27577586|gb|CB000281.1|CB000281
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGT
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAEST: gi|29687680|gb|CB683955.1|CB683955
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACA
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAEST: gi|88296382|gb|CI669158.1|CI669158
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACA
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACEST: gi|88340089|gb|CI650536.1|CI650536
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAAC
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACAACCAGCEST: gi|88570491|gb|CI661864.1|CI661864
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAACAACCAGC
EST: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTG GTTGACGAATGGTATGAACAACC
genomic: TTCAAGAGGCTCAAAGGTGTTTTGAGGATTGCCGACGTGTTAGGGGTTTGgtaagtatat ... ttacttgcagGTTGACGAATGGTATGAACAACC
aaatatgtatgaagtagtaccatagcatttacttcaatattgcccttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAATAGACGGGCAAAGCGTTGGTGCCTGGATCAACCTCGTAAAGCAACTCC
cccttac putative branch site (score: 7)
cccttactt CT-rich tract
atttacttcaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgaaccacccatatgtgcaaatgatcatgtgtcatgtcagctcaaatatgtatgaagtagtaccatagcatttacttcaatattgcccttacttgcagGTTGACGAATGGTATGAACAACCAGCAGCAACAGTCGTTGACTGGGTGACAATAGACGGGCAAAGCGTTGGTGCCTGGATCAACCTCGTAAAGCAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aacgaac
- - - - - - -tatgtgc
- - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - catgtca
- - - - - - - - - - - - - - - - - - - - - - - - -atgtatg