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...aaattggatcgactgccttgcttaatgctagaatttgcttagtagctggtaagcctcatatttatgcttaaataagtgattcttttgttctgtaatgcagGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACATCAAGCAATCAACTTTTAACGCTGTGGTTTATTCCATGCTGCCAGTTCACCAAGCTCT
species | Oryza sativa |
transcript | LOC_Os09g12660.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86496727|gb|CI139360.1|CI139360
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|87009864|gb|CI277365.1|CI277365
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|88222446|gb|CI222402.1|CI222402
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|88222920|gb|CI220666.1|CI220666
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|87018057|gb|CI275871.1|CI275871
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|89164207|gb|CI101295.1|CI101295
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|88967313|gb|CI002497.1|CI002497
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|58683758|gb|CK072445.1|CK072445
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|88957454|gb|CI095395.1|CI095395
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|29675781|gb|CB672056.1|CB672056
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86494922|gb|CI137555.1|CI137555
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|218485015|gb|FG946141.1|FG946141
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86504993|gb|CI147626.1|CI147626
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGCCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|87010148|gb|CI279245.1|CI279245
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G-CC-TTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86500004|gb|CI142637.1|CI142637
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86504994|gb|CI147627.1|CI147627
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGCCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACAEST: gi|86500640|gb|CI143273.1|CI143273
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G-CC-TTGCAGCATATGGTGATCTGATCTCCAGTGCACA
EST: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACT GTACATAAGGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
genomic: ACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTgtacataagg ... tgtaatgcagGT---T--GG--G--CCTTGCAGCATATGGTGATCTGATCTCCAGTGCACA
ctggtaagcctcatatttatgcttaaataagtgattcttttgttctgtaatgcagGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACATCAAGCAATCAACTTTTAACGCTGTGGTTTATTCCATGCTGCCAGTTCACCAAGCTCT
ttcttttgttctgt CT-rich tract
atatttatgcttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattggatcgactgccttgcttaatgctagaatttgcttagtagctggtaagcctcatatttatgcttaaataagtgattcttttgttctgtaatgcagGTTGGGCCTTGCAGCATATGGTGATCTGATCTCCAGTGCACATCAAGCAATCAACTTTTAACGCTGTGGTTTATTCCATGCTGCCAGTTCACCAAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - -cgactgc
- - - - - - - - -ttgctta
- - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - -agctggt