1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaatactctctcaatgtttatcacttctaaattgtgagtattgttacttatattttgtttttattgcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGA
species | Oryza sativa |
transcript | LOC_Os09g10600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGG ATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGEST: gi|58669339|gb|CK058025.1|CK058025
genomic: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGGgtgaatactc ... gcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAG
EST: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGG ATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGEST: gi|29670467|gb|CB666742.1|CB666742
genomic: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGGgtgaatactc ... gcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAG
EST: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGG ATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGEST: gi|218501539|gb|FG956143.1|FG956143
genomic: GGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGGgtgaatactc ... gcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAG
EST: TATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGG ATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAG
genomic: TATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGGgtgaatactc ... gcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAG
tcacttctaaattgtgagtattgttacttatattttgtttttattgcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGA
ttctaaa putative branch site (score: 17)
tttttattgctttt putative PPT
tattgttacttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatactctctcaatgtttatcacttctaaattgtgagtattgttacttatattttgtttttattgcttttatagATACGGTGGCGGCATGAGCTCAGCAAAAGCAGCACTTGAGAGTGATACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA