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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtcaggcactcttatacagtaggaactgtgtttcgttcctcccaaatattttcatttgctcaaactcataccttccttttatgttttgttcgtcacagTTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAG

Basic information

species Oryza sativa
transcript LOC_Os09g06499.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613614|gb|CB618627.1|CB618627
EST:     CTAAAGCTTTGGCTGCGAAGAATGGCTATGAGTTGGACCCCAATAAGGAG                         TTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATAT
genomic: CTAAAGCTTTGGCTGCGAAGAATGGCTATGAGTTGGACCCCAATAAGGAGgttagttgta ... ttcgtcacagTTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATAT
EST: gi|29661763|gb|CB658038.1|CB658038
EST:     CTAAAGCTTTGGCTGCGAAGAATGGCTATGAGTTGGACCCCAATAAGGAG                         TTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATAT
genomic: CTAAAGCTTTGGCTGCGAAGAATGGCTATGAGTTGGACCCCAATAAGGAGgttagttgta ... ttcgtcacagTTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattttcatttgctcaaactcataccttccttttatgttttgttcgtcacagTTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAG
                           ccttccttttatgttt  CT-rich tract
                                 ttttatgttttgtt  TA-rich tract