1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgaatcctctgcatattgatacgtttgcatttgccgtttcctgtggcttactgccagatccagaatctgaccggtgcatgctttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAG
species | Oryza sativa |
transcript | LOC_Os08g44400.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|55408882|gb|CV721258.1|CV721258
genomic: CTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|86834825|gb|CI345909.1|CI345909
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: TAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|86872687|gb|CI341897.1|CI341897
genomic: TAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|86843061|gb|CI342256.1|CI342256
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: CAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|33821435|gb|CF336529.1|CF336529
genomic: CAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|29687876|gb|CB684151.1|CB684151
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|58589659|gb|CF987967.1|CF987967
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|38478016|gb|CF962149.1|CF962149
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|58593409|gb|CF991717.1|CF991717
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|27577571|gb|CB000266.1|CB000266
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: CAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|88996530|gb|CI260034.1|CI260034
genomic: CAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|27548923|gb|CA767585.2|CA767585
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGGGAGACCCTTGTTGAATTAGAGTTGEST: gi|12623212|gb|AU173425.1|AU173425
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGEST: gi|29685102|gb|CB681377.1|CB681377
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
EST: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
genomic: ATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAGgtctgaatcc ... ttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTG
ttcctgtggcttactgccagatccagaatctgaccggtgcatgctttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAG
atctgac putative branch site (score: 28)
ctttatc putative PPT
tttatcat TA-rich tract