1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcataattagaacctccagtatgatcatcattatatgccatgcctttctttagaacaattcaatataaattgcatatcttatgttttctatcaacagtttcgtttatttgcttgtcttcatcatctcttgtgcatggcttgatatatcatgtccttactgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTA
species | Oryza sativa |
transcript | LOC_Os08g41010.7 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|58678017|gb|CK066704.1|CK066704
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: ATTTCAGACAAACAATGCAAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88489293|gb|CI426565.1|CI426565
genomic: ATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88834501|gb|CI077784.1|CI077784
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTTGTCGTCAAGEST: gi|88538337|gb|CI467355.1|CI467355
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|86887368|gb|CI313271.1|CI313271
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88539609|gb|CI469580.1|CI469580
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGGTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88834372|gb|CI077655.1|CI077655
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCGAGCGTCGTCGTCAAGEST: gi|88834645|gb|CI077928.1|CI077928
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|86835017|gb|CI346497.1|CI346497
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88457894|gb|CI542076.1|CI542076
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88558049|gb|CI488508.1|CI488508
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|3763615|gb|AU030367.1|AU030367
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|86492153|gb|CI134786.1|CI134786
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88226642|gb|CI226558.1|CI226558
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88549046|gb|CI478898.1|CI478898
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|86427700|gb|CI072797.1|CI072797
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATTTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|88223683|gb|CI223532.1|CI223532
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAG TGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATTTCAGACAAACAATGCTAATGAGTCATCTGCTGATCAGGACAATCAGgtgcataatt ... actgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
ttgtcttcatcatctcttgtgcatggcttgatatatcatgtccttactgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTA
tccttac putative branch site (score: 16)
tccttact CT-rich tract
ttgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcataattagaacctccagtatgatcatcattatatgccatgcctttctttagaacaattcaatataaattgcatatcttatgttttctatcaacagtttcgtttatttgcttgtcttcatcatctcttgtgcatggcttgatatatcatgtccttactgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT