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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtcgactgaccttgctagagctgattacactttggaaaccaatgatgcaacatctatgagatactgaaatgttccattgtcattcactcaatgaaattctttggccacttttgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGCCTTCGCCTCCGCAATGCCTACATCACCACCCTGAATGTCTGCCAGGCTT

Basic information

species Oryza sativa
transcript LOC_Os08g27840.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g27840.1 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 3'ss of exon 9
gtgcgtcgactgaccttgctagagctgattacactttggaaacc-aatgatgcaacatctatgaga-tactgaaatgttccattgtcattcactcaatgaaattctttggccacttttgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGCCTTCGCCTCCGCAATGCCTACATCACCACCCTGAATGTCTGCCAGGCTT
                        ||||  | | ||  ||| |  |||  |     |   |||||| |    ||||| |  ||||     |   |||     || |||  || || |  |     || |||||||||||||||| ||||| ||||| |||| |||| |||||||  | || ||||| ||  |  |||||||||| ||||| ||||||||||| || |
------------------------ctgaaga-atttcagaacctgaattgtttccaactcatgagagtttcaaaatgatagattgagtaacttccaacttgtttttttttcctctgt--attggtagATTGCTGGACACAAGGACCTTCTTGAAGGGGATCCCTACTTGAAGCAAAGACTCCGCCTGCGTGACTCCTACATCACAACCCTAAATGTCTGCCAAGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86518824|gb|CI159030.1|CI159030
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|5667217|gb|AU077503.1|AU077503
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29629204|gb|CB634215.1|CB634215
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29672057|gb|CB668332.1|CB668332
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|38474043|gb|CF958175.1|CF958175
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86520239|gb|CI160445.1|CI160445
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86436879|gb|CI118601.1|CI118601
EST:     GAGAGAAACTGAGGGCCGACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86482240|gb|CI124873.1|CI124873
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86481752|gb|CI124385.1|CI124385
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTCGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|88244581|gb|CI243703.1|CI243703
EST:     CAACTGTGAAGATACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: CAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86482214|gb|CI124847.1|CI124847
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGTAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86477402|gb|CI120035.1|CI120035
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|88985162|gb|CI006816.1|CI006816
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCACACAGCTTCTCCTTCAG                         GTTGCTGG--ACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86437873|gb|CI119793.1|CI119793
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29629585|gb|CB634594.1|CB634594
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|25778153|gb|CA752905.1|CA752905
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86513144|gb|CI155777.1|CI155777
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86521694|gb|CI161900.1|CI161900
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86514053|gb|CI156686.1|CI156686
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86480182|gb|CI122815.1|CI122815
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|38473253|gb|CF957385.1|CF957385
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86478399|gb|CI121032.1|CI121032
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29660785|gb|CB657060.1|CB657060
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86480576|gb|CI123209.1|CI123209
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86827082|gb|CI270806.1|CI270806
EST:     GAGAGAAACTGAGGGCCAACTGTGAGGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86518831|gb|CI159037.1|CI159037
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29630866|gb|CB635875.1|CB635875
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAACCCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|89173729|gb|CI041622.1|CI041622
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86478267|gb|CI120900.1|CI120900
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86513145|gb|CI155778.1|CI155778
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86514370|gb|CI157003.1|CI157003
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86514231|gb|CI156864.1|CI156864
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86481132|gb|CI123765.1|CI123765
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGGACACCAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCT-GGACA-CAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGC
EST: gi|29660928|gb|CB657203.1|CB657203
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86479462|gb|CI122095.1|CI122095
EST:     GAAACTGAGGGCCAACTTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACCAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCG
genomic: GAAACTGAGGGCCAAC-TGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACA-CAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCG
EST: gi|86482231|gb|CI124864.1|CI124864
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86520567|gb|CI160773.1|CI160773
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAGCCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29687836|gb|CB684111.1|CB684111
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29645827|gb|CB650834.1|CB650834
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29632849|gb|CB637858.1|CB637858
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86519695|gb|CI159901.1|CI159901
EST:     GAGAGAAACTGAGGCCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|42591805|gb|CK738291.1|CK738291
EST:     GAGAGAAGCTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86518339|gb|CI158545.1|CI158545
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|87027508|gb|CI272273.1|CI272273
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|25778085|gb|CA752837.1|CA752837
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|58594066|gb|CF992374.1|CF992374
EST:     AACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGAGGTCGTACCTGAAGCAGCG
genomic: AACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTC-TACCTGAAGCAGCG
EST: gi|29661383|gb|CB657658.1|CB657658
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29656727|gb|CB653002.1|CB653002
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTTTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86477372|gb|CI120005.1|CI120005
EST:     GAGAGAAACTGAGGGCCCACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|87029779|gb|CI274460.1|CI274460
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86480333|gb|CI122966.1|CI122966
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|8955786|gb|BE229591.1|BE229591
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGRAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86478447|gb|CI121080.1|CI121080
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|87017179|gb|CI272580.1|CI272580
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86513733|gb|CI156366.1|CI156366
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29629555|gb|CB634564.1|CB634564
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86479669|gb|CI122302.1|CI122302
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|14571285|gb|BI118653.1|BI118653
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86491720|gb|CI134353.1|CI134353
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|87013848|gb|CI271239.1|CI271239
EST:     GAGAGAAACTGAGGGCCAACTGTGGAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86481353|gb|CI123986.1|CI123986
EST:     GAGAGAAACTGAGGCCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|22306041|gb|BQ907263.1|BQ907263
EST:     GAGAGAAGCTGAGGGCCAACTGTGAAGAAACC-TACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29615815|gb|CB620827.1|CB620827
EST:     GAGAGAAGCTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86514584|gb|CI157217.1|CI157217
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86517382|gb|CI157588.1|CI157588
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|27576491|gb|CA999185.1|CA999185
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|58608111|gb|CK036144.1|CK036144
EST:     GAGAGAAACTGAGGGCCGACGGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29684531|gb|CB680806.1|CB680806
EST:     GAAGAAACCAAACACCCTTTTCCTTC-G                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAAGAAACCAAACA-GCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|8858633|gb|AU095951.1|AU095951
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|27547042|gb|CA765088.2|CA765088
EST:     GAGAGAAGCTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCNTCAG                         GNTGCTGGACACAAGGATCTTCTCGAAAGNGATCTCTACCTGAAGCAGCGN
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86827557|gb|CI272881.1|CI272881
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|86855821|gb|CI271040.1|CI271040
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|87029870|gb|CI274551.1|CI274551
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
EST: gi|29660927|gb|CB657202.1|CB657202
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAN                         GTTGCTGGACACAAGGATCTTCT
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCT
EST: gi|86481251|gb|CI123884.1|CI123884
EST:     GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAG                         GTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC
genomic: GAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 21

CGCCGCATTGTACGACAAGCTCCTTGTCTCCGAGGAGCTATGGCCTCTGGGAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGgtgcgtcgac ... tgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGCCTTCGCCTCCGCAATGCCTACATCACCACCCTGAATGTCTGCCAGGCTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttccattgtcattcactcaatgaaattctttggccacttttgaccttcagGTTGCTGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGCCTTCGCCTCCGCAATGCCTACATCACCACCCTGAATGTCTGCCAGGCTT
                                          ttttgac  putative branch site (score: 21)
                                      ccactttt  CT-rich tract
                       aatgaaatt  TA-rich tract