1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acttacatgtttggatactatgcatctaccacattataaaacgctctaaatatttacatttttggtaatctttattgacctgccttgccttgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATTATAAGAAGAATAAAAGCAGTTCAAGGCACTTTATTCCCTTTTTTTTTC
species | Oryza sativa |
transcript | LOC_Os08g25734.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|89177014|gb|CI111214.1|CI111214
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29681077|gb|CB677352.1|CB677352
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|86417728|gb|CI031937.1|CI031937
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29612859|gb|CB617872.1|CB617872
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATATGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29671442|gb|CB667717.1|CB667717
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|86599888|gb|CI256050.1|CI256050
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29660395|gb|CB656670.1|CB656670
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|88835869|gb|CI370974.1|CI370974
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGGTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTTATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29620180|gb|CB625192.1|CB625192
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATATGATGGGGCATCGGCGACGAGCACCAGGCGGGCATEST: gi|29633748|gb|CB638757.1|CB638757
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
EST: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAA GTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
genomic: TGTTACCGTGATCAAGGATGCTTTGCTCCCTAGCGGAACAGTTATATGAAgtaagttatc ... tgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCAT
ctaaatatttacatttttggtaatctttattgacctgccttgccttgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATTATAAGAAGAATAAAAGCAGTTCAAGGCACTTTATTCCCTTTTTTTTTC
tattgac putative branch site (score: 11)
ccttgccttgccct putative PPT
tatttacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttacatgtttggatactatgcatctaccacattataaaacgctctaaatatttacatttttggtaatctttattgacctgccttgccttgccctgcagGTAGCTGCGTAATATGTGATGGGGCATCGGCGACGAGCACCAGGCGGGCATTATAAGAAGAATAAAAGCAGTTCAAGGCACTTTATTCCCTTTTTTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - acatgtt
- - - - - - - - -ctatgca
- - - - - - - - - - - - -ctaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgcc