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...ttcaaacaatattttcaaaagaatattttttttccatacatgttatactgaagtttatagcagcatcctcaaccgtggtaattttggtggttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCTGAGATTGAGCAACGAAGGGGTTCATTTGCTAGGCTACATCTTTTGAAG
species | Oryza sativa |
transcript | LOC_Os08g25310.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAG CTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCTEST: gi|29638641|gb|CB643650.1|CB643650
genomic: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAGgtaatttttg ... ttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCT
EST: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAG CTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCTEST: gi|29640687|gb|CB645696.1|CB645696
genomic: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAGgtaatttttg ... ttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCT
EST: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAG CTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCT
genomic: GATGCCTCAAGTCTAACAAAGGCCCATGGAATGATCCTAACATTATGAAGgtaatttttg ... ttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCT
tactgaagtttatagcagcatcctcaaccgtggtaattttggtggttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCTGAGATTGAGCAACGAAGGGGTTCATTTGCTAGGCTACATCTTTTGAAG
aagtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaacaatattttcaaaagaatattttttttccatacatgttatactgaagtttatagcagcatcctcaaccgtggtaattttggtggttgcttgcagCTTGCACATAATAAGGAGGCAAAATTTACTAGACATACTCGGCGCTTGTCTGAGATTGAGCAACGAAGGGGTTCATTTGCTAGGCTACATCTTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - aacaata
- - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - -atacatg
- - - - - - - - - - - - - - - - - - - - - - -tactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg