1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtttgatgtattttcacacttccatatggagctatggttgctcaagcttttttctgcattaaagaaaacctcagtgtaccttcattctgctcgtgttactctcgaaatatcttattttctagagtcgagatgactagacccaccttactgctggcgcctaatacctgcacattacagCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAG
species | Oryza sativa |
transcript | LOC_Os08g07880.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTTGTGTATCCTTCAAG CTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAEST: gi|38475745|gb|CF959878.1|CF959878
genomic: TCATTCTGAGAAAACAATGGGCTCCTTCAGCATTTTGTGTATCCTTCAAGgttagtttga ... cacattacagCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGA
EST: TCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTAGTGTATCCTTCAAG CTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAEST: gi|109712370|gb|CI104978.1|CI104978
genomic: TCATTCTGAGAAAACAATGGGCTCCTTCAGCATTTTGTGTATCCTTCAAGgttagtttga ... cacattacagCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGA
EST: TCATTCTGAGAAAACAATGGGCTCCTTCAGCATTTTGTGTATCGTTCAAG CTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGA
genomic: TCATTCTGAGAAAACAATGGGCTCCTTCAGCATTTTGTGTATCCTTCAAGgttagtttga ... cacattacagCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGA
agtcgagatgactagacccaccttactgctggcgcctaatacctgcacattacagCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAG
gcctaat putative branch site (score: 6)
taata TA-rich tract