1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgtattcgttctttatttcttcagtggtggaaggtggccaattactaaattttcctcaccaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATT
species | Oryza sativa |
transcript | LOC_Os08g01740.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAG GCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCEST: gi|27577615|gb|CB000310.1|CB000310
genomic: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGgtatgtgtat ... accaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACC
EST: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAG GCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCEST: gi|86427548|gb|CI072645.1|CI072645
genomic: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGgtatgtgtat ... accaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACC
EST: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAG GCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCEST: gi|66924274|gb|CX111122.1|CX111122
genomic: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGgtatgtgtat ... accaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACC
EST: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAG GCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACC
genomic: TCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGgtatgtgtat ... accaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACC
ttatttcttcagtggtggaaggtggccaattactaaattttcctcaccaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATT
ttttcctcacc CT-rich tract
aattactaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtattcgttctttatttcttcagtggtggaaggtggccaattactaaattttcctcaccaacacagGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG