1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttgccactgaaacattttaaaacatttgttggatgaaaaccgaatattctctcgttattttgcttgccactgaatcaacatttgcctattctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAGTTGGTCGGCGGAAGGCCTGAACATAAGTCGAAGCTTTGGATTTGTCTA
species | Oryza sativa |
transcript | LOC_Os07g48300.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGN-CAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|89163018|gb|CI099908.1|CI099908
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|33658199|gb|CF280813.1|CF280813
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|25803992|gb|CA759953.1|CA759953
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|55409065|gb|CV721441.1|CV721441
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|88990737|gb|CI108124.1|CI108124
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|88238682|gb|CI238531.1|CI238531
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|38481420|gb|CF965509.1|CF965509
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAEST: gi|66923189|gb|CX110037.1|CX110037
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAA
EST: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTACTTCGCTGCGAACAG TGTGGATCGTC
genomic: ATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgccg ... ttctgtctagTGTGGATCGTC
atattctctcgttattttgcttgccactgaatcaacatttgcctattctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAGTTGGTCGGCGGAAGGCCTGAACATAAGTCGAAGCTTTGGATTTGTCTA
cctattct CT-rich tract
ttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgccactgaaacattttaaaacatttgttggatgaaaaccgaatattctctcgttattttgcttgccactgaatcaacatttgcctattctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAGTTGGTCGGCGGAAGGCCTGAACATAAGTCGAAGCTTTGGATTTGTCTA
- - gccactg
- - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc