1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...cttaaatacttatagacaaaatgtttgcctaagcatgtagggacatacactattgcttgaattaatatggttcttggatatatttcatttttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
species | Oryza sativa |
transcript | LOC_Os07g47530.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCCTTCGTTGCTGGCGAGT GGACAGTTTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAGGEST: gi|58692511|gb|CK081198.1|CK081198
genomic: GATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
EST: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGT GGACAGTTTTCAAAGTCGAAGGAATCTGAGTCGTACAEST: gi|29685521|gb|CB681796.1|CB681796
genomic: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACA
EST: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGT GGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAGEST: gi|25797788|gb|CA753749.1|CA753749
genomic: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
EST: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGT GGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAGEST: gi|58612597|gb|CK040309.1|CK040309
genomic: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
EST: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGT GGACAGTTTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAGGEST: gi|58608751|gb|CK036784.1|CK036784
genomic: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
EST: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGT GGACAGTTTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAGG
genomic: AACACTTTGGTGCTAAGCTGCTCATTATAGATCCTTCGTTGCTGGCGAGTgtaagcttct ... ttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
tacactattgcttgaattaatatggttcttggatatatttcatttttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
aattaat putative branch site (score: 22)
tatttcatttttcttt putative PPT
atatatttcatttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaatacttatagacaaaatgtttgcctaagcatgtagggacatacactattgcttgaattaatatggttcttggatatatttcatttttcttttcagGGACAGTCTTCAAAGTCGAAGGAATCTGAGTCGTACAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA