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gttagtattaatactctgcagatttattcccagtaaagcaggtgatgtttatttgaactcaggtatgattattacatttgctacatactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCACAAACCGAAGCAAGCTTCTCCGATTTTTTGCCGGATTCAAGATTGACA
species | Oryza sativa |
transcript | LOC_Os07g39630.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGAGATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAGCTGAGGTTGTAAACATACTAGTCEST: gi|38473913|gb|CF958045.1|CF958045
genomic: GAGAGATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|58598860|gb|CK009388.1|CK009388
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGGGAGGATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGEST: gi|86528760|gb|CI168966.1|CI168966
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGC-GGCA-AATAAAAACAAGCCAACTGAGGTTGTAAACATACTAG
EST: CATGTGTTCAAG TTATTTGCGGCAAATAAAGACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29675062|gb|CB671337.1|CB671337
genomic: CATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|218481593|gb|FG960934.1|FG960934
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29673566|gb|CB669841.1|CB669841
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|86500993|gb|CI143626.1|CI143626
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|88226063|gb|CI225979.1|CI225979
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCCAAAATATTCAAATGTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATATATACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|38481075|gb|CF965164.1|CF965164
genomic: GATTCAAGCAAAAATATTCAAAT-TGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|88214576|gb|CI214425.1|CI214425
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: ATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29673647|gb|CB669922.1|CB669922
genomic: ATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|89170800|gb|CI040077.1|CI040077
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTEST: gi|88490037|gb|CI427309.1|CI427309
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGT-GTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGT
EST: TGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29679531|gb|CB675806.1|CB675806
genomic: TGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|87008328|gb|CI301086.1|CI301086
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29664684|gb|CB660959.1|CB660959
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGC-AAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|58663168|gb|CK051854.1|CK051854
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|25799534|gb|CA755495.1|CA755495
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29656023|gb|CB652298.1|CB652298
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|66915714|gb|CX102562.1|CX102562
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|58688748|gb|CK077435.1|CK077435
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|29660229|gb|CB656504.1|CB656504
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCEST: gi|86426306|gb|CI071403.1|CI071403
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
EST: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAG TTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
genomic: GATTCAAGCAAAAATATTCAAATTGAAGCATTTCATGTGTTCAAGgttagtatta ... catactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTC
caggtgatgtttatttgaactcaggtatgattattacatttgctacatactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCACAAACCGAAGCAAGCTTCTCCGATTTTTTGCCGGATTCAAGATTGACA
tatgattattacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattaatactctgcagatttattcccagtaaagcaggtgatgtttatttgaactcaggtatgattattacatttgctacatactgcagTTATTTGCGGCAAATAAAAACAAGCCAACTGAGGTTGTAAACATACTAGTCACAAACCGAAGCAAGCTTCTCCGATTTTTTGCCGGATTCAAGATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT