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...tctcttgacttccatttgtaggactcccaacagtttactttttggaaagtacagtagcatcttttttacttgcttacaaatgatcatcattttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAGTGGACCTGCTCTGACAATAAA
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG TGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTEST: gi|29661017|gb|CB657292.1|CB657292
genomic: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGgtaatgctct ... tttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
EST: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG TGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTEST: gi|218487780|gb|FG970670.1|FG970670
genomic: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGgtaatgctct ... tttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
EST: GAGCCACCAATACTTGGGAGGAGGACATATATTGTGACAGACCAATCAGG TGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTACGTGGCGTAAACTEST: gi|88347742|gb|CI655095.1|CI655095
genomic: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGgtaatgctct ... tttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
EST: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG TGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTEST: gi|88570252|gb|CI661427.1|CI661427
genomic: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGgtaatgctct ... tttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
EST: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG TGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
genomic: GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGgtaatgctct ... tttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACT
aaagtacagtagcatcttttttacttgcttacaaatgatcatcattttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAGTGGACCTGCTCTGACAATAAA
tgcttac putative branch site (score: 25)
tcatttttt putative PPT
atcatcatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttgacttccatttgtaggactcccaacagtttactttttggaaagtacagtagcatcttttttacttgcttacaaatgatcatcattttttaccagTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAGTGGACCTGCTCTGACAATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - -cagtagc