1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cacacagcaaaatccaccgagataatgccattcaatcgtttgattccgtgccactttctccttttttttctttctcaacccaatgtaaaatctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGGGCGGCATCATCGACTCCGATGGCGAGGTGATCGCGAGAGGGGATGGAT
species | Oryza sativa |
transcript | LOC_Os07g37580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAG GTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACACA-EST: gi|88963956|gb|CI032873.1|CI032873
genomic: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAGgtactgtgtt ... tctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCAC-CAA
EST: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAG GTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGEST: gi|86831221|gb|CI297490.1|CI297490
genomic: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAGgtactgtgtt ... tctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAG
EST: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAG GTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGEST: gi|86416146|gb|CI030157.1|CI030157
genomic: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAGgtactgtgtt ... tctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAG
EST: TGAAGGATGGCAGCTATGTCATATCCCCCTATGTGGAGTACTTCAAG GTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGEST: gi|86907346|gb|CI296450.1|CI296450
genomic: TGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAGgtactgtgtt ... tctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAG
EST: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAG GTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAG
genomic: AGATGAAGGATGGCAGCTATGTCAAATCCCCCTATGTGGAGTACTTCAAGgtactgtgtt ... tctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAG
ccgtgccactttctccttttttttctttctcaacccaatgtaaaatctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGGGCGGCATCATCGACTCCGATGGCGAGGTGATCGCGAGAGGGGATGGAT
tctct CT-rich tract
ttttttttctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacagcaaaatccaccgagataatgccattcaatcgtttgattccgtgccactttctccttttttttctttctcaacccaatgtaaaatctctgacagGTGAAGGCTCTCAGGATTGAGCCGGGAATGCGGGTGGGCAGCACCACCAAGGGCGGCATCATCGACTCCGATGGCGAGGTGATCGCGAGAGGGGATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA