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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggaattctgctttcattcagaaggatttatgtctttcatggacaaaattcattttatggttcaattttcaggttcttcgattttaaggcgcataatctgctttcctgcagaaggattaatgctttttcatggacaaaattcattttgtggctcaattttcagGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCTGTACCAAAGGATTCTCATGCCCTATATTCTCTGATTGATCCATCTGAG

Basic information

species Oryza sativa
transcript LOC_Os07g30160.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86845760|gb|CI347045.1|CI347045
EST:     GAGGATGCTTTTAAG                         GTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCTGTACCA
genomic: GAGGATGCTTTTAAGgtgcggaatt ... caattttcagGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCTGTACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaaggattaatgctttttcatggacaaaattcattttgtggctcaattttcagGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCTGTACCAAAGGATTCTCATGCCCTATATTCTCTGATTGATCCATCTGAG
      gattaat  putative branch site (score: 3)
                                                ttttc  putative PPT
                         acaaaattcatttt  TA-rich tract