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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagctggcctcctcaccttcgtcgtcttcgttgatctgctatatatctgtctgtctgtctgtctctaatttgttccctgcagATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAG

Basic information

species Oryza sativa
transcript LOC_Os07g26900.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26900.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G146463_T02 (Zea mays), 3'ss of exon 11
---------------------gtatagctggcctcctcaccttcgtcgtcttcgttgat----ctgct------atatatctgtctgtctgtctgtctctaatttgttcc-ctgcagATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAG
                        | |    |||| ||  ||  | ||   | | | ||    | |||      |   | |||   |   | |||  |    | | | || | ||||| |||||||||||||||||||| || ||||| ||| || || ||||||||||||||||| ||||||| ||||| || ||||||
gtcaattccttcgtccacgtctcctcgtcatcctcatcctctctgccgctatagcttattatgccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttgatctgctatatatctgtctgtctgtctgtctctaatttgttccctgcagATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAG
                                   ctctaat  putative branch site (score: 3)
                                         tttgttccct  CT-rich tract
            tatatatct  TA-rich tract