1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatgacatgcggaacttcggcagtgtcaattttttacctcacattataagtcatctgtcttattagctatcactatatgatgtcaacactaatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAG GCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGEST: gi|29628582|gb|CB633593.1|CB633593
genomic: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAGgtacatcctt ... taatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
EST: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAG GCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGEST: gi|86828581|gb|CI278671.1|CI278671
genomic: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAGgtacatcctt ... taatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
EST: CCATTGATGTTGACAAGAATGGAACAATTAGTTTGGAAGAACTGAAGCAG GCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGEST: gi|29682050|gb|CB678325.1|CB678325
genomic: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAGgtacatcctt ... taatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
EST: CCATTGATGTTGCCAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAG GCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGEST: gi|86433426|gb|CI093769.1|CI093769
genomic: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAGgtacatcctt ... taatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
EST: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAG GCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
genomic: CCATTGATGTTGACAAGAATGGAACAATTAGTCTGGAAGAACTGAAGCAGgtacatcctt ... taatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAG
tataagtcatctgtcttattagctatcactatatgatgtcaacactaatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA
cactaat putative branch site (score: 2)
tcttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgacatgcggaacttcggcagtgtcaattttttacctcacattataagtcatctgtcttattagctatcactatatgatgtcaacactaatttgcagGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATTGTTGAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - gacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt