1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgcatttcgtaaaaaaaatggtgcatttggtatgtttgctagtttaggaaaataatatttgtggttgtgcatgatggttctgacattttgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTGAAAAGAGAGCTATCGAGGAGAGAAAGCGACTCAAGGAGGCTGGGGTTA
species | Oryza sativa |
transcript | LOC_Os07g22640.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29689585|gb|CB685860.1|CB685860
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: AATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29624992|gb|CB630003.1|CB630003
genomic: AATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29665128|gb|CB661403.1|CB661403
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29662980|gb|CB659255.1|CB659255
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29658143|gb|CB654418.1|CB654418
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: TAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|88736008|gb|CI759516.1|CI759516
genomic: TAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: GGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29657425|gb|CB653700.1|CB653700
genomic: GGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTEST: gi|29685261|gb|CB681536.1|CB681536
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
EST: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAG GTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
genomic: ATTCTCTTAAAATTAAGGACACCAAGGATAGAGGAACATTACATCTTCAGgttagcatga ... tgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCT
ttaggaaaataatatttgtggttgtgcatgatggttctgacattttgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTGAAAAGAGAGCTATCGAGGAGAGAAAGCGACTCAAGGAGGCTGGGGTTA
ttctgac putative branch site (score: 2)
ttttgcttttc CT-rich tract
aaaataatatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcatttcgtaaaaaaaatggtgcatttggtatgtttgctagtttaggaaaataatatttgtggttgtgcatgatggttctgacattttgcttttcagGTCACATATCACCCATTTTCAAAGGAAGAACAGATGGAAGCCCTAGAGTCTGAAAAGAGAGCTATCGAGGAGAGAAAGCGACTCAAGGAGGCTGGGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG