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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcccttgagattttgttattccattatgttaaaactaattggtagtgataagtgggcatactacgtgctttatttacactcctttttttgtatggaacagGTGGAACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGTTGTGCGAGCACTGGCTTCAATTGCATATGCCACGGGGTGCTGTGCTGTCA

Basic information

species Oryza sativa
transcript LOC_Os07g16950.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89169827|gb|CI110186.1|CI110186
EST:     CTGATTTGAGATCAAATATAGGGAAAAAATCCAAGAAGCTTATCACTGAG                         GTGGAACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGTT
genomic: CTGATTTGAGATCAAATATAGGGAAAAAATCCAAGAAGCTTATCACTGAGgtaaagagct ... tatggaacagGTGGAACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGTT
EST: gi|3767671|gb|AU031698.1|AU031698
EST:     CTGATTTGANATCAAATATAGGGAAAAAATCCAAGANGCTTATCACTGAG                         GTGGACACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGT
genomic: CTGATTTGAGATCAAATATAGGGAAAAAATCCAAGAAGCTTATCACTGAGgtaaagagct ... tatggaacagGTGGA-ACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataagtgggcatactacgtgctttatttacactcctttttttgtatggaacagGTGGAACGAGATGATGACATGGGTATCAGACGAAGGACGCGAATGTGAGTTGTGCGAGCACTGGCTTCAATTGCATATGCCACGGGGTGCTGTGCTGTCA
                               cactcctttttttgt  CT-rich tract
                                     tttttttgtat  TA-rich tract