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gttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT
species | Oryza sativa |
transcript | LOC_Os07g14270.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGEST: gi|14192066|gb|AU184277.1|AU184277
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGEST: gi|66915891|gb|CX102739.1|CX102739
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG GTCAAATCAGGTACTCTGGTTGAAAACTTCCTTATTACTGACGACCCTGAGEST: gi|8856749|gb|AU094067.1|AU094067
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGEST: gi|58679227|gb|CK067914.1|CK067914
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
EST: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAG GTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
genomic: ACATCTATGCTTTTGACAGCCTGAAGTACATTGGCATTGAGTTGTGGCAGgttagttaag ... ctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAG
caggaagacagacataaatagttatgaacttatcccttctctcttctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT
cttatcccttctctct CT-rich tract
ataaatagttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttaagcaaagtacagtacgcctttagttctgatttattttgctgggtcaggaagacagacataaatagttatgaacttatcccttctctcttctatcaacagGTCAAATCAGGTACTCTGTTTGACAACTTCCTTATTACTGACGACCCTGAGTTGGCCAAGACATTCGCAGAGGAGACATGGGGCAAGCACAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA