1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatgtatgagttattcttgtatctccactctctatttgctcttgtctgttattttgtctgcgttggtttttgttctaacagcattcttgcactctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACACTGCTTTCTATGAATTCTCTTCACTGCTTGCAGAAAAG
species | Oryza sativa |
transcript | LOC_Os07g10130.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTG GGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACAEST: gi|87028062|gb|CI257222.1|CI257222
genomic: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTGgtgagtattt ... actctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACA
EST: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTG GGCTGACTGCACGAATAATCAATGAAACGAATTCTATGGCTGATGTGTACAEST: gi|218505007|gb|FG953269.1|FG953269
genomic: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTGgtgagtattt ... actctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACA
EST: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTG GGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACAEST: gi|29615456|gb|CB620468.1|CB620468
genomic: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTGgtgagtattt ... actctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACA
EST: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTG GGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACA
genomic: GTGCTATAACAATGTGAATGTATTTCGAGGAGTTGTGAAGTTGAGGCGTGgtgagtattt ... actctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACA
ctgttattttgtctgcgttggtttttgttctaacagcattcttgcactctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACACTGCTTTCTATGAATTCTCTTCACTGCTTGCAGAAAAG
ttctaac putative branch site (score: 16)
cactctc putative PPT
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtatgagttattcttgtatctccactctctatttgctcttgtctgttattttgtctgcgttggtttttgttctaacagcattcttgcactctcatagGGCTGACTGCACGAATAATCAATGAAACAAATTCTATGGCTGATGTGTACACTGCTTTCTATGAATTCTCTTCACTGCTTGCAGAAAAG
-atgtatg
- - - - - - attcttg
- - - - - - - - - - - - - - - - - - - - - - tctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcattc