1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgatgactataacttttaccaaattaaactggtctcagtatttgtctgtctgtacgcctgcattctaatagctgtataatccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACTAAAGCTCGCTCGAACTCATCTCGTTCATCTTCGAAAGCTCCTGGAGCT
species | Oryza sativa |
transcript | LOC_Os07g07974.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACCCATTCCTTGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAG TTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACEST: gi|163928715|gb|EG711228.1|EG711228
genomic: CACCCATTCCTTGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAGgtttgatgac ... tccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTAC
EST: CCGATAACTCCACCTTTCGATGTTTCAAG TTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACEST: gi|86495658|gb|CI138291.1|CI138291
genomic: CCGATAACTCCACCTTTCGATGTTTCAAGgtttgatgac ... tccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTAC
EST: CACCCATTCCTTGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAG TTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACEST: gi|86513770|gb|CI156403.1|CI156403
genomic: CACCCATTCCTTGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAGgtttgatgac ... tccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTAC
EST: CACCCATTCCTGGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAG TTCTTTGCTCAAACCACCCAACTTCTCGAGTGCAAAGCCACCAAGGCCTAC
genomic: CACCCATTCCTTGAACTTGTCCCGATAACTCCACCTTTCGATGTTTCAAGgtttgatgac ... tccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTAC
tcagtatttgtctgtctgtacgcctgcattctaatagctgtataatccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACTAAAGCTCGCTCGAACTCATCTCGTTCATCTTCGAAAGCTCCTGGAGCT
ttctaat putative branch site (score: 40)
tccttttc putative PPT
attctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatgactataacttttaccaaattaaactggtctcagtatttgtctgtctgtacgcctgcattctaatagctgtataatccttttcagTTCGTTGCTCAAACCACCAAACTTCTCGAGTGCAAAGCCACCAAGGCCTACTAAAGCTCGCTCGAACTCATCTCGTTCATCTTCGAAAGCTCCTGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT