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gtatgttatccaatatatgcatttctttctgtatgggataatgcctttttggggaccaactacatttttgcggttctgcctgttcacagtactaaaatctcaaccatatttgtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAA ATACTGGACACTGTTGCAGAGACACAGGAACGTCACGATGCTGTAAGAGATEST: gi|58593226|gb|CF991534.1|CF991534
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCGGCAGCAGGGAAGAGGCCAA ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATEST: gi|58596499|gb|CK007027.1|CK007027
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAA ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATEST: gi|88468042|gb|CI517501.1|CI517501
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAA ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATEST: gi|58679994|gb|CK068681.1|CK068681
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAA ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTEST: gi|88964544|gb|CI069892.1|CI069892
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCT
EST: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGGGGCCAA ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
genomic: GAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAgtatgttatc ... gtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGAT
tttgcggttctgcctgttcacagtactaaaatctcaaccatatttgtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG
tactaaa putative branch site (score: 40)
tttgtctttcc putative PPT
tactaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttatccaatatatgcatttctttctgtatgggataatgcctttttggggaccaactacatttttgcggttctgcctgttcacagtactaaaatctcaaccatatttgtctttccagATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA