1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcttcacctcatataatgctcagcaaatccatgcaagaaaaggaattaatatctccaagtaggatgagcagcaacttgcaaggaacagaagtgcagttccactgaaaacagctggtgttttcttttttttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAGCCAAGAACGCCGGCCAGGCGCAGGAGTTCGCCGGCGCGCTCGGCTGGA
species | Oryza sativa |
transcript | LOC_Os07g04990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|88519585|gb|CI447239.1|CI447239
genomic: ACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATNTGGTGCCAATCCCCGGAEST: gi|88663321|gb|CI480586.1|CI480586
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: GAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATNTGGTGCCAATCCCCGGAEST: gi|86885123|gb|CI315694.1|CI315694
genomic: GAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: GATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGCCTAACATTCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|29686327|gb|CB682602.1|CB682602
genomic: GATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|86892489|gb|CI311960.1|CI311960
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|88505384|gb|CI432890.1|CI432890
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: GAACAGGATCAAGGAGATTGGGAGAAAGCTATGGGAAGAACCCAACGCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|86862869|gb|CI331708.1|CI331708
genomic: GAACAGGATCAAGGAGATT-GGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|58612576|gb|CK040288.1|CK040288
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: AGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|86840691|gb|CI333939.1|CI333939
genomic: AGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATTCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|88472610|gb|CI409881.1|CI409881
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|29686352|gb|CB682627.1|CB682627
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGTTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|29684749|gb|CB681024.1|CB681024
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|29685611|gb|CB681886.1|CB681886
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|29685612|gb|CB681887.1|CB681887
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAEST: gi|86838940|gb|CI330354.1|CI330354
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATTCCAAGGCAATTTGGTGCCAATCCCCGGAEST: gi|88380235|gb|CI516222.1|CI516222
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
EST: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAG GTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
genomic: TGAACAGGATCAAGGAGATTGGAGAAAGCTATGGGAAGAACCCAACCCAGgtgcttcacc ... tttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGA
gaacagaagtgcagttccactgaaaacagctggtgttttcttttttttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAGCCAAGAACGCCGGCCAGGCGCAGGAGTTCGCCGGCGCGCTCGGCTGGA
tgttttcttttttttg CT-rich tract
ttttcttttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttcacctcatataatgctcagcaaatccatgcaagaaaaggaattaatatctccaagtaggatgagcagcaacttgcaaggaacagaagtgcagttccactgaaaacagctggtgttttcttttttttgtttcagGTTTCACTGAACTGGCTGACATGCCAAGGCAATGTGGTGCCAATCCCCGGAGCCAAGAACGCCGGCCAGGCGCAGGAGTTCGCCGGCGCGCTCGGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA