1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagcaactcatcagcatgtaacccttgttatttttaaccaatgtattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGCCTAGACGACAGGCAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
species | Oryza sativa |
transcript | LOC_Os07g01880.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|86597143|gb|CI272738.1|CI272738
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|88845026|gb|CI083951.1|CI083951
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|86840445|gb|CI342619.1|CI342619
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCCCAAACCATCATTTCCTGCTCGTCCGEST: gi|29639167|gb|CB644176.1|CB644176
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|86482587|gb|CI125220.1|CI125220
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|88991021|gb|CI108408.1|CI108408
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGEST: gi|58674618|gb|CK063305.1|CK063305
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
EST: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAG TCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
genomic: AACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAGTTAGTGCAAAGAAGgtgagcaact ... acattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCG
ttttaaccaatgtattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGCCTAGACGACAGGCAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
ttttaac putative branch site (score: 18)
cattttc putative PPT
tgtttatacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaactcatcagcatgtaacccttgttatttttaaccaatgtattgctgtttatacataatctgtattgtttgcacattttcagTCAAGTATGGGCAGAAACATTCCTCGCAAACCATCATTTCCTGCTCGTCCGCCTAGACGACAGGCAAATGAATATTCTGAGAGTGAAAGGGAGGAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG